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  "Author": "Liangkang Wang [aut, cre]\n(<https://orcid.org/0000-0003-3393-243X>), Irina Gaynanova\n[aut] (<https://orcid.org/0000-0002-4116-0268>), Benjamin Risk\n[aut] (<https://orcid.org/0000-0003-1090-0777>)",
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